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286 lines
12 KiB
Python
286 lines
12 KiB
Python
from __future__ import annotations
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from typing import TYPE_CHECKING
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import numpy as np
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from contourpy._contourpy import (
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ContourGenerator,
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FillType,
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LineType,
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Mpl2005ContourGenerator,
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Mpl2014ContourGenerator,
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SerialContourGenerator,
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ThreadedContourGenerator,
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ZInterp,
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max_threads,
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)
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from contourpy._version import __version__
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from contourpy.chunk import calc_chunk_sizes
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from contourpy.convert import (
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convert_filled,
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convert_lines,
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convert_multi_filled,
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convert_multi_lines,
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)
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from contourpy.dechunk import (
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dechunk_filled,
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dechunk_lines,
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dechunk_multi_filled,
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dechunk_multi_lines,
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)
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from contourpy.enum_util import as_fill_type, as_line_type, as_z_interp
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if TYPE_CHECKING:
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from typing import Any
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from numpy.typing import ArrayLike
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from ._contourpy import CoordinateArray, MaskArray
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__all__ = [
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"__version__",
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"contour_generator",
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"convert_filled",
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"convert_lines",
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"convert_multi_filled",
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"convert_multi_lines",
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"dechunk_filled",
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"dechunk_lines",
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"dechunk_multi_filled",
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"dechunk_multi_lines",
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"max_threads",
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"FillType",
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"LineType",
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"ContourGenerator",
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"Mpl2005ContourGenerator",
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"Mpl2014ContourGenerator",
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"SerialContourGenerator",
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"ThreadedContourGenerator",
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"ZInterp",
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]
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# Simple mapping of algorithm name to class name.
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_class_lookup: dict[str, type[ContourGenerator]] = {
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"mpl2005": Mpl2005ContourGenerator,
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"mpl2014": Mpl2014ContourGenerator,
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"serial": SerialContourGenerator,
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"threaded": ThreadedContourGenerator,
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}
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def _remove_z_mask(
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z: ArrayLike | np.ma.MaskedArray[Any, Any] | None,
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) -> tuple[CoordinateArray, MaskArray | None]:
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# Preserve mask if present.
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z_array = np.ma.asarray(z, dtype=np.float64) # type: ignore[no-untyped-call]
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z_masked = np.ma.masked_invalid(z_array, copy=False) # type: ignore[no-untyped-call]
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if np.ma.is_masked(z_masked):
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mask = np.ma.getmask(z_masked)
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else:
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mask = None
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return np.ma.getdata(z_masked), mask # type: ignore[no-untyped-call]
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def contour_generator(
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x: ArrayLike | None = None,
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y: ArrayLike | None = None,
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z: ArrayLike | np.ma.MaskedArray[Any, Any] | None = None,
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*,
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name: str = "serial",
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corner_mask: bool | None = None,
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line_type: LineType | str | None = None,
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fill_type: FillType | str | None = None,
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chunk_size: int | tuple[int, int] | None = None,
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chunk_count: int | tuple[int, int] | None = None,
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total_chunk_count: int | None = None,
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quad_as_tri: bool = False,
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z_interp: ZInterp | str | None = ZInterp.Linear,
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thread_count: int = 0,
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) -> ContourGenerator:
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"""Create and return a :class:`~.ContourGenerator` object.
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The class and properties of the returned :class:`~.ContourGenerator` are determined by the
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function arguments, with sensible defaults.
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Args:
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x (array-like of shape (ny, nx) or (nx,), optional): The x-coordinates of the ``z`` values.
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May be 2D with the same shape as ``z.shape``, or 1D with length ``nx = z.shape[1]``.
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If not specified are assumed to be ``np.arange(nx)``. Must be ordered monotonically.
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y (array-like of shape (ny, nx) or (ny,), optional): The y-coordinates of the ``z`` values.
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May be 2D with the same shape as ``z.shape``, or 1D with length ``ny = z.shape[0]``.
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If not specified are assumed to be ``np.arange(ny)``. Must be ordered monotonically.
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z (array-like of shape (ny, nx), may be a masked array): The 2D gridded values to calculate
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the contours of. May be a masked array, and any invalid values (``np.inf`` or
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``np.nan``) will also be masked out.
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name (str): Algorithm name, one of ``"serial"``, ``"threaded"``, ``"mpl2005"`` or
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``"mpl2014"``, default ``"serial"``.
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corner_mask (bool, optional): Enable/disable corner masking, which only has an effect if
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``z`` is a masked array. If ``False``, any quad touching a masked point is masked out.
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If ``True``, only the triangular corners of quads nearest these points are always masked
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out, other triangular corners comprising three unmasked points are contoured as usual.
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If not specified, uses the default provided by the algorithm ``name``.
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line_type (LineType or str, optional): The format of contour line data returned from calls
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to :meth:`~.ContourGenerator.lines`, specified either as a :class:`~.LineType` or its
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string equivalent such as ``"SeparateCode"``.
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If not specified, uses the default provided by the algorithm ``name``.
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The relationship between the :class:`~.LineType` enum and the data format returned from
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:meth:`~.ContourGenerator.lines` is explained at :ref:`line_type`.
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fill_type (FillType or str, optional): The format of filled contour data returned from calls
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to :meth:`~.ContourGenerator.filled`, specified either as a :class:`~.FillType` or its
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string equivalent such as ``"OuterOffset"``.
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If not specified, uses the default provided by the algorithm ``name``.
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The relationship between the :class:`~.FillType` enum and the data format returned from
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:meth:`~.ContourGenerator.filled` is explained at :ref:`fill_type`.
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chunk_size (int or tuple(int, int), optional): Chunk size in (y, x) directions, or the same
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size in both directions if only one value is specified.
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chunk_count (int or tuple(int, int), optional): Chunk count in (y, x) directions, or the
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same count in both directions if only one value is specified.
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total_chunk_count (int, optional): Total number of chunks.
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quad_as_tri (bool): Enable/disable treating quads as 4 triangles, default ``False``.
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If ``False``, a contour line within a quad is a straight line between points on two of
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its edges. If ``True``, each full quad is divided into 4 triangles using a virtual point
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at the centre (mean x, y of the corner points) and a contour line is piecewise linear
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within those triangles. Corner-masked triangles are not affected by this setting, only
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full unmasked quads.
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z_interp (ZInterp or str, optional): How to interpolate ``z`` values when determining where
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contour lines intersect the edges of quads and the ``z`` values of the central points of
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quads, specified either as a :class:`~contourpy.ZInterp` or its string equivalent such
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as ``"Log"``. Default is ``ZInterp.Linear``.
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thread_count (int): Number of threads to use for contour calculation, default 0. Threads can
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only be used with an algorithm ``name`` that supports threads (currently only
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``name="threaded"``) and there must be at least the same number of chunks as threads.
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If ``thread_count=0`` and ``name="threaded"`` then it uses the maximum number of threads
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as determined by the C++11 call ``std::thread::hardware_concurrency()``. If ``name`` is
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something other than ``"threaded"`` then the ``thread_count`` will be set to ``1``.
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Return:
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:class:`~.ContourGenerator`.
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Note:
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A maximum of one of ``chunk_size``, ``chunk_count`` and ``total_chunk_count`` may be
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specified.
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Warning:
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The ``name="mpl2005"`` algorithm does not implement chunking for contour lines.
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"""
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x = np.asarray(x, dtype=np.float64)
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y = np.asarray(y, dtype=np.float64)
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z, mask = _remove_z_mask(z)
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# Check arguments: z.
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if z.ndim != 2:
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raise TypeError(f"Input z must be 2D, not {z.ndim}D")
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if z.shape[0] < 2 or z.shape[1] < 2:
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raise TypeError(f"Input z must be at least a (2, 2) shaped array, but has shape {z.shape}")
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ny, nx = z.shape
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# Check arguments: x and y.
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if x.ndim != y.ndim:
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raise TypeError(f"Number of dimensions of x ({x.ndim}) and y ({y.ndim}) do not match")
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if x.ndim == 0:
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x = np.arange(nx, dtype=np.float64)
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y = np.arange(ny, dtype=np.float64)
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x, y = np.meshgrid(x, y)
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elif x.ndim == 1:
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if len(x) != nx:
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raise TypeError(f"Length of x ({len(x)}) must match number of columns in z ({nx})")
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if len(y) != ny:
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raise TypeError(f"Length of y ({len(y)}) must match number of rows in z ({ny})")
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x, y = np.meshgrid(x, y)
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elif x.ndim == 2:
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if x.shape != z.shape:
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raise TypeError(f"Shapes of x {x.shape} and z {z.shape} do not match")
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if y.shape != z.shape:
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raise TypeError(f"Shapes of y {y.shape} and z {z.shape} do not match")
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else:
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raise TypeError(f"Inputs x and y must be None, 1D or 2D, not {x.ndim}D")
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# Check mask shape just in case.
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if mask is not None and mask.shape != z.shape:
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raise ValueError("If mask is set it must be a 2D array with the same shape as z")
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# Check arguments: name.
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if name not in _class_lookup:
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raise ValueError(f"Unrecognised contour generator name: {name}")
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# Check arguments: chunk_size, chunk_count and total_chunk_count.
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y_chunk_size, x_chunk_size = calc_chunk_sizes(
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chunk_size, chunk_count, total_chunk_count, ny, nx)
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cls = _class_lookup[name]
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# Check arguments: corner_mask.
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if corner_mask is None:
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# Set it to default, which is True if the algorithm supports it.
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corner_mask = cls.supports_corner_mask()
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elif corner_mask and not cls.supports_corner_mask():
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raise ValueError(f"{name} contour generator does not support corner_mask=True")
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# Check arguments: line_type.
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if line_type is None:
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line_type = cls.default_line_type
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else:
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line_type = as_line_type(line_type)
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if not cls.supports_line_type(line_type):
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raise ValueError(f"{name} contour generator does not support line_type {line_type}")
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# Check arguments: fill_type.
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if fill_type is None:
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fill_type = cls.default_fill_type
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else:
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fill_type = as_fill_type(fill_type)
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if not cls.supports_fill_type(fill_type):
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raise ValueError(f"{name} contour generator does not support fill_type {fill_type}")
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# Check arguments: quad_as_tri.
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if quad_as_tri and not cls.supports_quad_as_tri():
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raise ValueError(f"{name} contour generator does not support quad_as_tri=True")
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# Check arguments: z_interp.
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if z_interp is None:
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z_interp = ZInterp.Linear
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else:
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z_interp = as_z_interp(z_interp)
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if z_interp != ZInterp.Linear and not cls.supports_z_interp():
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raise ValueError(f"{name} contour generator does not support z_interp {z_interp}")
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# Check arguments: thread_count.
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if thread_count not in (0, 1) and not cls.supports_threads():
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raise ValueError(f"{name} contour generator does not support thread_count {thread_count}")
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# Prepare args and kwargs for contour generator constructor.
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args = [x, y, z, mask]
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kwargs: dict[str, int | bool | LineType | FillType | ZInterp] = {
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"x_chunk_size": x_chunk_size,
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"y_chunk_size": y_chunk_size,
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}
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if name not in ("mpl2005", "mpl2014"):
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kwargs["line_type"] = line_type
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kwargs["fill_type"] = fill_type
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if cls.supports_corner_mask():
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kwargs["corner_mask"] = corner_mask
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if cls.supports_quad_as_tri():
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kwargs["quad_as_tri"] = quad_as_tri
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if cls.supports_z_interp():
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kwargs["z_interp"] = z_interp
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if cls.supports_threads():
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kwargs["thread_count"] = thread_count
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# Create contour generator.
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return cls(*args, **kwargs)
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