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229 lines
7.2 KiB
Python
229 lines
7.2 KiB
Python
from io import BytesIO
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import os
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import pathlib
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import tarfile
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import zipfile
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import numpy as np
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import pytest
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from pandas.compat.pyarrow import pa_version_under17p0
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from pandas import (
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DataFrame,
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Index,
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date_range,
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read_csv,
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read_excel,
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read_json,
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read_parquet,
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)
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import pandas._testing as tm
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from pandas.util import _test_decorators as td
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pytestmark = pytest.mark.filterwarnings(
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"ignore:Passing a BlockManager to DataFrame:DeprecationWarning"
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)
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@pytest.fixture
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def gcs_buffer():
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"""Emulate GCS using a binary buffer."""
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pytest.importorskip("gcsfs")
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fsspec = pytest.importorskip("fsspec")
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gcs_buffer = BytesIO()
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gcs_buffer.close = lambda: True
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class MockGCSFileSystem(fsspec.AbstractFileSystem):
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@staticmethod
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def open(*args, **kwargs):
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gcs_buffer.seek(0)
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return gcs_buffer
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def ls(self, path, **kwargs):
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# needed for pyarrow
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return [{"name": path, "type": "file"}]
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# Overwrites the default implementation from gcsfs to our mock class
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fsspec.register_implementation("gs", MockGCSFileSystem, clobber=True)
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return gcs_buffer
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# Patches pyarrow; other processes should not pick up change
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@pytest.mark.single_cpu
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@pytest.mark.parametrize("format", ["csv", "json", "parquet", "excel", "markdown"])
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def test_to_read_gcs(gcs_buffer, format, monkeypatch, capsys, request):
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"""
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Test that many to/read functions support GCS.
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GH 33987
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"""
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df1 = DataFrame(
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{
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"int": [1, 3],
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"float": [2.0, np.nan],
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"str": ["t", "s"],
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"dt": date_range("2018-06-18", periods=2),
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}
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)
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path = f"gs://test/test.{format}"
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if format == "csv":
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df1.to_csv(path, index=True)
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df2 = read_csv(path, parse_dates=["dt"], index_col=0)
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elif format == "excel":
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path = "gs://test/test.xlsx"
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df1.to_excel(path)
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df2 = read_excel(path, parse_dates=["dt"], index_col=0)
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elif format == "json":
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df1.to_json(path)
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df2 = read_json(path, convert_dates=["dt"])
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elif format == "parquet":
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pytest.importorskip("pyarrow")
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pa_fs = pytest.importorskip("pyarrow.fs")
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class MockFileSystem(pa_fs.FileSystem):
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@staticmethod
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def from_uri(path):
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print("Using pyarrow filesystem")
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to_local = pathlib.Path(path.replace("gs://", "")).absolute().as_uri()
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return pa_fs.LocalFileSystem(to_local)
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request.applymarker(
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pytest.mark.xfail(
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not pa_version_under17p0,
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raises=TypeError,
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reason="pyarrow 17 broke the mocked filesystem",
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)
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)
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with monkeypatch.context() as m:
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m.setattr(pa_fs, "FileSystem", MockFileSystem)
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df1.to_parquet(path)
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df2 = read_parquet(path)
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captured = capsys.readouterr()
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assert captured.out == "Using pyarrow filesystem\nUsing pyarrow filesystem\n"
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elif format == "markdown":
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pytest.importorskip("tabulate")
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df1.to_markdown(path)
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df2 = df1
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tm.assert_frame_equal(df1, df2)
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def assert_equal_zip_safe(result: bytes, expected: bytes, compression: str):
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"""
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For zip compression, only compare the CRC-32 checksum of the file contents
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to avoid checking the time-dependent last-modified timestamp which
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in some CI builds is off-by-one
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See https://en.wikipedia.org/wiki/ZIP_(file_format)#File_headers
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"""
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if compression == "zip":
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# Only compare the CRC checksum of the file contents
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with zipfile.ZipFile(BytesIO(result)) as exp, zipfile.ZipFile(
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BytesIO(expected)
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) as res:
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for res_info, exp_info in zip(res.infolist(), exp.infolist()):
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assert res_info.CRC == exp_info.CRC
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elif compression == "tar":
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with tarfile.open(fileobj=BytesIO(result)) as tar_exp, tarfile.open(
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fileobj=BytesIO(expected)
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) as tar_res:
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for tar_res_info, tar_exp_info in zip(
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tar_res.getmembers(), tar_exp.getmembers()
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):
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actual_file = tar_res.extractfile(tar_res_info)
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expected_file = tar_exp.extractfile(tar_exp_info)
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assert (actual_file is None) == (expected_file is None)
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if actual_file is not None and expected_file is not None:
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assert actual_file.read() == expected_file.read()
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else:
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assert result == expected
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@pytest.mark.parametrize("encoding", ["utf-8", "cp1251"])
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def test_to_csv_compression_encoding_gcs(
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gcs_buffer, compression_only, encoding, compression_to_extension
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):
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"""
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Compression and encoding should with GCS.
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GH 35677 (to_csv, compression), GH 26124 (to_csv, encoding), and
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GH 32392 (read_csv, encoding)
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"""
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df = DataFrame(
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1.1 * np.arange(120).reshape((30, 4)),
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columns=Index(list("ABCD")),
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index=Index([f"i-{i}" for i in range(30)]),
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)
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# reference of compressed and encoded file
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compression = {"method": compression_only}
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if compression_only == "gzip":
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compression["mtime"] = 1 # be reproducible
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buffer = BytesIO()
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df.to_csv(buffer, compression=compression, encoding=encoding, mode="wb")
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# write compressed file with explicit compression
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path_gcs = "gs://test/test.csv"
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df.to_csv(path_gcs, compression=compression, encoding=encoding)
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res = gcs_buffer.getvalue()
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expected = buffer.getvalue()
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assert_equal_zip_safe(res, expected, compression_only)
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read_df = read_csv(
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path_gcs, index_col=0, compression=compression_only, encoding=encoding
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)
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tm.assert_frame_equal(df, read_df)
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# write compressed file with implicit compression
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file_ext = compression_to_extension[compression_only]
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compression["method"] = "infer"
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path_gcs += f".{file_ext}"
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df.to_csv(path_gcs, compression=compression, encoding=encoding)
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res = gcs_buffer.getvalue()
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expected = buffer.getvalue()
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assert_equal_zip_safe(res, expected, compression_only)
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read_df = read_csv(path_gcs, index_col=0, compression="infer", encoding=encoding)
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tm.assert_frame_equal(df, read_df)
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def test_to_parquet_gcs_new_file(monkeypatch, tmpdir):
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"""Regression test for writing to a not-yet-existent GCS Parquet file."""
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pytest.importorskip("fastparquet")
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pytest.importorskip("gcsfs")
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from fsspec import AbstractFileSystem
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df1 = DataFrame(
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{
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"int": [1, 3],
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"float": [2.0, np.nan],
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"str": ["t", "s"],
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"dt": date_range("2018-06-18", periods=2),
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}
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)
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class MockGCSFileSystem(AbstractFileSystem):
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def open(self, path, mode="r", *args):
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if "w" not in mode:
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raise FileNotFoundError
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return open(os.path.join(tmpdir, "test.parquet"), mode, encoding="utf-8")
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monkeypatch.setattr("gcsfs.GCSFileSystem", MockGCSFileSystem)
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df1.to_parquet(
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"gs://test/test.csv", index=True, engine="fastparquet", compression=None
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)
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@td.skip_if_installed("gcsfs")
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def test_gcs_not_present_exception():
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with tm.external_error_raised(ImportError):
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read_csv("gs://test/test.csv")
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